Genomics and Bioinformatics

Ghahramani Seno MM, Gwadry FG, Hu P, Scherer, SW. Neuregulin 1-alpha regulates phosphorylation, acetylation, and alternative splicing in lymphoblastoid cells. Genome. 2013 Oct; 56(10):619-25.

Ghahramani Seno MM, Hu P, Gwadry FG, Pinto D, Marshall CR, Cassalloa G, Scherer SW. Gene and miRNA Expression Profiles in Autism Spectrum Disorders. Brain Res. 2011 Mar 22; 1380: 85-97.

Bussey K, Chin K, Lababidi S, Reimers M, Reinhold WC, Kuo W, Gwadry FG, Ajay, et al. Integrating data on DNA copy number with gene expression levels and drug sensitivities in the NCI-60 Cell Line Panel. Mol Cancer Ther, 2006 Apr; 5(4):853-67.

Sequeira PA, Gwadry FG, Ffrench-Mullen JMH, Canetti L, Casero Jr RA, Turecki G. Gene expression and genetic variation implicate SSAT in suicide and major depression. Arch Gen Psychiatry. 2006 Jan; 63(1):35-48.

Gwadry FG, Sequeira PA, Hoke GH, ffrench-Mullen JMH, , Turecki G. Molecular characterization of suicide by microarray analysis. Am J Med Genet. C Semin Med Genet. 2005.

Lee JK, Bussey KJ, Gwadry FG, Reinhold W, Riddick G, Pelletier SL, Nishizuka S, Szakacs G, Annereau JP, Shankavaram U, Lababidi S, Smith LH, Gottesman MM, Weinstein JN. Comparing cDNA and oligonucleotide array data: concordance of gene expression across platforms for the NCI-60 cancer cells. Genome Biol. 2003; 4(12):R82. Epub 2003 Nov 25.

Nishizuka S, Chen ST, Gwadry FG, Alexander J, Major SM, Scherf U, Reinhold WC, Waltham M, Charboneau L, Young L, Bussey KJ, Kim S, Lababidi S, Lee JK, Pittaluga S, Scudiero DA, Sausville EA, Munson PJ, Petricoin EF 3rd, Liotta LA, Hewitt SM, Raffeld M, Weinstein JN. Diagnostic markers that distinguish colon and ovarian adenocarcinomas: identification by genomic, proteomic, and tissue array profiling. Cancer Res. 2003 Sep 1; 63(17):5243-50.

Zhou Y, Gwadry FG, Reinhold WC, Miller LD, Smith LH, Scherf U, Liu ET, Kohn KW, Pommier Y, Weinstein JN. Transcriptional regulation of mitotic genes by camptothecin-induced DNA damage: microarray analysis of dose- and time-dependent effects. Cancer Res. 2002 Mar 15; 62(6):1688-95.

Weinstein JN, Scherf U, Lee JK, Nishizuka S, Gwadry F, Bussey AK, Kim S, Smith LH, Tanabe L, Richman S, Alexander J, Kouros-Mehr H, Maunakea A, Reinhold WC. The bioinformatics of microarray gene expression profiling. Cytometry. 2002 Jan 1; 47(1):46-9.